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A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.

Identifieur interne : 001303 ( Main/Exploration ); précédent : 001302; suivant : 001304

A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.

Auteurs : Jiyeon Choi [États-Unis] ; Mai Xu [États-Unis] ; Matthew M. Makowski [Pays-Bas] ; Tongwu Zhang [États-Unis] ; Matthew H. Law [Australie] ; Michael A. Kovacs [États-Unis] ; Anton Granzhan [France] ; Wendy J. Kim [États-Unis] ; Hemang Parikh [États-Unis] ; Michael Gartside [Australie] ; Jeffrey M. Trent [États-Unis] ; Marie-Paule Teulade-Fichou [France] ; Mark M. Iles [Royaume-Uni] ; Julia A. Newton-Bishop [Royaume-Uni] ; D Timothy Bishop [Royaume-Uni] ; Stuart Macgregor [Australie] ; Nicholas K. Hayward [Australie] ; Michiel Vermeulen [Pays-Bas] ; Kevin M. Brown [États-Unis]

Source :

RBID : pubmed:28759004

Descripteurs français

English descriptors

Abstract

Previous genome-wide association studies have identified a melanoma-associated locus at 1q42.1 that encompasses a ∼100-kb region spanning the PARP1 gene. Expression quantitative trait locus (eQTL) analysis in multiple cell types of the melanocytic lineage consistently demonstrated that the 1q42.1 melanoma risk allele (rs3219090[G]) is correlated with higher PARP1 levels. In silico fine-mapping and functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r(2) = 0.947 with rs3219090), as displaying allele-specific transcriptional activity. A proteomic screen identified RECQL as binding to rs144361550 in an allele-preferential manner. In human primary melanocytes, PARP1 promoted cell proliferation and rescued BRAF(V600E)-induced senescence phenotypes in a PARylation-independent manner. PARP1 also transformed TERT-immortalized melanocytes expressing BRAF(V600E). PARP1-mediated senescence rescue was accompanied by transcriptional activation of the melanocyte-lineage survival oncogene MITF, highlighting a new role for PARP1 in melanomagenesis.

DOI: 10.1038/ng.3927
PubMed: 28759004


Affiliations:


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Le document en format XML

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<title xml:lang="en">A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.</title>
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<name sortKey="Choi, Jiyeon" sort="Choi, Jiyeon" uniqKey="Choi J" first="Jiyeon" last="Choi">Jiyeon Choi</name>
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<nlm:affiliation>Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland</wicri:regionArea>
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<region type="state">Maryland</region>
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<name sortKey="Xu, Mai" sort="Xu, Mai" uniqKey="Xu M" first="Mai" last="Xu">Mai Xu</name>
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<nlm:affiliation>Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.</nlm:affiliation>
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<name sortKey="Teulade Fichou, Marie Paule" sort="Teulade Fichou, Marie Paule" uniqKey="Teulade Fichou M" first="Marie-Paule" last="Teulade-Fichou">Marie-Paule Teulade-Fichou</name>
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<name sortKey="Bishop, D Timothy" sort="Bishop, D Timothy" uniqKey="Bishop D" first="D Timothy" last="Bishop">D Timothy Bishop</name>
<affiliation wicri:level="4">
<nlm:affiliation>Section of Epidemiology and Biostatistics, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Section of Epidemiology and Biostatistics, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds</wicri:regionArea>
<orgName type="university">Université de Leeds</orgName>
<placeName>
<settlement type="city">Leeds</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Yorkshire-et-Humber</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Macgregor, Stuart" sort="Macgregor, Stuart" uniqKey="Macgregor S" first="Stuart" last="Macgregor">Stuart Macgregor</name>
<affiliation wicri:level="1">
<nlm:affiliation>QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>QIMR Berghofer Medical Research Institute, Brisbane, Queensland</wicri:regionArea>
<wicri:noRegion>Queensland</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Hayward, Nicholas K" sort="Hayward, Nicholas K" uniqKey="Hayward N" first="Nicholas K" last="Hayward">Nicholas K. Hayward</name>
<affiliation wicri:level="1">
<nlm:affiliation>QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>QIMR Berghofer Medical Research Institute, Brisbane, Queensland</wicri:regionArea>
<wicri:noRegion>Queensland</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Vermeulen, Michiel" sort="Vermeulen, Michiel" uniqKey="Vermeulen M" first="Michiel" last="Vermeulen">Michiel Vermeulen</name>
<affiliation wicri:level="3">
<nlm:affiliation>Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen</wicri:regionArea>
<placeName>
<settlement type="city">Nimègue</settlement>
<region type="province" nuts="2">Gueldre</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Brown, Kevin M" sort="Brown, Kevin M" uniqKey="Brown K" first="Kevin M" last="Brown">Kevin M. Brown</name>
<affiliation wicri:level="2">
<nlm:affiliation>Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland</wicri:regionArea>
<placeName>
<region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Nature genetics</title>
<idno type="eISSN">1546-1718</idno>
<imprint>
<date when="2017" type="published">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Base Sequence</term>
<term>Cell Aging (genetics)</term>
<term>Cell Line, Tumor</term>
<term>Cell Proliferation (genetics)</term>
<term>Cell Transformation, Neoplastic (genetics)</term>
<term>Cells, Cultured</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Expression Regulation, Neoplastic</term>
<term>Humans</term>
<term>INDEL Mutation</term>
<term>Immunoblotting</term>
<term>Introns (genetics)</term>
<term>Melanocytes (metabolism)</term>
<term>Melanoma (genetics)</term>
<term>Melanoma (metabolism)</term>
<term>Melanoma (pathology)</term>
<term>Microphthalmia-Associated Transcription Factor (genetics)</term>
<term>Microphthalmia-Associated Transcription Factor (metabolism)</term>
<term>Microscopy, Confocal</term>
<term>Poly (ADP-Ribose) Polymerase-1 (genetics)</term>
<term>Poly (ADP-Ribose) Polymerase-1 (metabolism)</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Proto-Oncogene Proteins B-raf (genetics)</term>
<term>Proto-Oncogene Proteins B-raf (metabolism)</term>
<term>Risk Factors</term>
<term>Telomerase (genetics)</term>
<term>Telomerase (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Analyse de profil d'expression de gènes ()</term>
<term>Cellules cultivées</term>
<term>Facteur de transcription associé à la microphtalmie (génétique)</term>
<term>Facteur de transcription associé à la microphtalmie (métabolisme)</term>
<term>Facteurs de risque</term>
<term>Humains</term>
<term>Immunotransfert</term>
<term>Introns (génétique)</term>
<term>Lignée cellulaire tumorale</term>
<term>Microscopie confocale</term>
<term>Mutation de type INDEL</term>
<term>Mélanocytes (métabolisme)</term>
<term>Mélanome (anatomopathologie)</term>
<term>Mélanome (génétique)</term>
<term>Mélanome (métabolisme)</term>
<term>Poly (ADP-Ribose) polymerase-1 (génétique)</term>
<term>Poly (ADP-Ribose) polymerase-1 (métabolisme)</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Prolifération cellulaire (génétique)</term>
<term>Protéines proto-oncogènes B-raf (génétique)</term>
<term>Protéines proto-oncogènes B-raf (métabolisme)</term>
<term>Régulation de l'expression des gènes tumoraux</term>
<term>Séquence nucléotidique</term>
<term>Telomerase (génétique)</term>
<term>Telomerase (métabolisme)</term>
<term>Transformation cellulaire néoplasique (génétique)</term>
<term>Vieillissement de la cellule (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Microphthalmia-Associated Transcription Factor</term>
<term>Poly (ADP-Ribose) Polymerase-1</term>
<term>Proto-Oncogene Proteins B-raf</term>
<term>Telomerase</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomopathologie" xml:lang="fr">
<term>Mélanome</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Cell Aging</term>
<term>Cell Proliferation</term>
<term>Cell Transformation, Neoplastic</term>
<term>Introns</term>
<term>Melanoma</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Facteur de transcription associé à la microphtalmie</term>
<term>Introns</term>
<term>Mélanome</term>
<term>Poly (ADP-Ribose) polymerase-1</term>
<term>Prolifération cellulaire</term>
<term>Protéines proto-oncogènes B-raf</term>
<term>Telomerase</term>
<term>Transformation cellulaire néoplasique</term>
<term>Vieillissement de la cellule</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Melanocytes</term>
<term>Melanoma</term>
<term>Microphthalmia-Associated Transcription Factor</term>
<term>Poly (ADP-Ribose) Polymerase-1</term>
<term>Proto-Oncogene Proteins B-raf</term>
<term>Telomerase</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Gene Expression Profiling</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Facteur de transcription associé à la microphtalmie</term>
<term>Mélanocytes</term>
<term>Mélanome</term>
<term>Poly (ADP-Ribose) polymerase-1</term>
<term>Protéines proto-oncogènes B-raf</term>
<term>Telomerase</term>
</keywords>
<keywords scheme="MESH" qualifier="pathology" xml:lang="en">
<term>Melanoma</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Base Sequence</term>
<term>Cell Line, Tumor</term>
<term>Cells, Cultured</term>
<term>Gene Expression Regulation, Neoplastic</term>
<term>Humans</term>
<term>INDEL Mutation</term>
<term>Immunoblotting</term>
<term>Microscopy, Confocal</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Risk Factors</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de profil d'expression de gènes</term>
<term>Cellules cultivées</term>
<term>Facteurs de risque</term>
<term>Humains</term>
<term>Immunotransfert</term>
<term>Lignée cellulaire tumorale</term>
<term>Microscopie confocale</term>
<term>Mutation de type INDEL</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Régulation de l'expression des gènes tumoraux</term>
<term>Séquence nucléotidique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Previous genome-wide association studies have identified a melanoma-associated locus at 1q42.1 that encompasses a ∼100-kb region spanning the PARP1 gene. Expression quantitative trait locus (eQTL) analysis in multiple cell types of the melanocytic lineage consistently demonstrated that the 1q42.1 melanoma risk allele (rs3219090[G]) is correlated with higher PARP1 levels. In silico fine-mapping and functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r(2) = 0.947 with rs3219090), as displaying allele-specific transcriptional activity. A proteomic screen identified RECQL as binding to rs144361550 in an allele-preferential manner. In human primary melanocytes, PARP1 promoted cell proliferation and rescued BRAF(V600E)-induced senescence phenotypes in a PARylation-independent manner. PARP1 also transformed TERT-immortalized melanocytes expressing BRAF(V600E). PARP1-mediated senescence rescue was accompanied by transcriptional activation of the melanocyte-lineage survival oncogene MITF, highlighting a new role for PARP1 in melanomagenesis.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Australie</li>
<li>France</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
<region>
<li>Angleterre</li>
<li>Arizona</li>
<li>Gueldre</li>
<li>Maryland</li>
<li>Yorkshire-et-Humber</li>
</region>
<settlement>
<li>Leeds</li>
<li>Nimègue</li>
<li>Orsay</li>
</settlement>
<orgName>
<li>Université de Leeds</li>
</orgName>
</list>
<tree>
<country name="États-Unis">
<region name="Maryland">
<name sortKey="Choi, Jiyeon" sort="Choi, Jiyeon" uniqKey="Choi J" first="Jiyeon" last="Choi">Jiyeon Choi</name>
</region>
<name sortKey="Brown, Kevin M" sort="Brown, Kevin M" uniqKey="Brown K" first="Kevin M" last="Brown">Kevin M. Brown</name>
<name sortKey="Kim, Wendy J" sort="Kim, Wendy J" uniqKey="Kim W" first="Wendy J" last="Kim">Wendy J. Kim</name>
<name sortKey="Kovacs, Michael A" sort="Kovacs, Michael A" uniqKey="Kovacs M" first="Michael A" last="Kovacs">Michael A. Kovacs</name>
<name sortKey="Parikh, Hemang" sort="Parikh, Hemang" uniqKey="Parikh H" first="Hemang" last="Parikh">Hemang Parikh</name>
<name sortKey="Trent, Jeffrey M" sort="Trent, Jeffrey M" uniqKey="Trent J" first="Jeffrey M" last="Trent">Jeffrey M. Trent</name>
<name sortKey="Xu, Mai" sort="Xu, Mai" uniqKey="Xu M" first="Mai" last="Xu">Mai Xu</name>
<name sortKey="Zhang, Tongwu" sort="Zhang, Tongwu" uniqKey="Zhang T" first="Tongwu" last="Zhang">Tongwu Zhang</name>
</country>
<country name="Pays-Bas">
<region name="Gueldre">
<name sortKey="Makowski, Matthew M" sort="Makowski, Matthew M" uniqKey="Makowski M" first="Matthew M" last="Makowski">Matthew M. Makowski</name>
</region>
<name sortKey="Vermeulen, Michiel" sort="Vermeulen, Michiel" uniqKey="Vermeulen M" first="Michiel" last="Vermeulen">Michiel Vermeulen</name>
</country>
<country name="Australie">
<noRegion>
<name sortKey="Law, Matthew H" sort="Law, Matthew H" uniqKey="Law M" first="Matthew H" last="Law">Matthew H. Law</name>
</noRegion>
<name sortKey="Gartside, Michael" sort="Gartside, Michael" uniqKey="Gartside M" first="Michael" last="Gartside">Michael Gartside</name>
<name sortKey="Hayward, Nicholas K" sort="Hayward, Nicholas K" uniqKey="Hayward N" first="Nicholas K" last="Hayward">Nicholas K. Hayward</name>
<name sortKey="Macgregor, Stuart" sort="Macgregor, Stuart" uniqKey="Macgregor S" first="Stuart" last="Macgregor">Stuart Macgregor</name>
</country>
<country name="France">
<noRegion>
<name sortKey="Granzhan, Anton" sort="Granzhan, Anton" uniqKey="Granzhan A" first="Anton" last="Granzhan">Anton Granzhan</name>
</noRegion>
<name sortKey="Teulade Fichou, Marie Paule" sort="Teulade Fichou, Marie Paule" uniqKey="Teulade Fichou M" first="Marie-Paule" last="Teulade-Fichou">Marie-Paule Teulade-Fichou</name>
</country>
<country name="Royaume-Uni">
<region name="Angleterre">
<name sortKey="Iles, Mark M" sort="Iles, Mark M" uniqKey="Iles M" first="Mark M" last="Iles">Mark M. Iles</name>
</region>
<name sortKey="Bishop, D Timothy" sort="Bishop, D Timothy" uniqKey="Bishop D" first="D Timothy" last="Bishop">D Timothy Bishop</name>
<name sortKey="Newton Bishop, Julia A" sort="Newton Bishop, Julia A" uniqKey="Newton Bishop J" first="Julia A" last="Newton-Bishop">Julia A. Newton-Bishop</name>
</country>
</tree>
</affiliations>
</record>

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